PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G058600.1
Common NamePHAVU_011G058600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 332aa    MW: 37482 Da    PI: 7.6359
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G058600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.8e-05171190120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         + Cp C k+F+r  n++ H+
  Phvul.011G058600.1 171 FACPLCFKTFNRYNNMQMHM 190
                         78*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-5171190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.619171198IPR007087Zinc finger, C2H2
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
SuperFamilySSF576672.88E-5237275No hitNo description
Gene3DG3DSA:3.30.160.602.0E-4241275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MTNSYRSNDL NFWLDLNSPC LLSSPSASTP PINPSFYFPS NYHTYTTVIS STQFQSSPPQ  60
TEALPFLHLR HQEEEAQYLQ SSFSAMEVDK KKEDLSTSKC LDEEDAVTVA LHLGLPSTSA  120
SADSASSLYS AEVSDKEEKI SDASGLLSDR INKGQYWIPT SAQILIGPTQ FACPLCFKTF  180
NRYNNMQMHM WGHGSQYRKG PESLRGTQPT AMLRLPCYCC APGCKNNIDH PRAKPLKDFR  240
TLQTHYKRKH GTKPFVCRKC CKTFAVRGDW RTHEKNCGKR WYCSCGSDFK HKRSLKDHIK  300
AFGYEHTAHG NDCMNLDQDD DQAGSEIEQE N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132003.10.0hypothetical protein PHAVU_011G058600g
SwissprotQ8W0311e-119ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLV7AEI60.0V7AEI6_PHAVU; Uncharacterized protein
STRINGGLYMA12G06080.11e-172(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-116C2H2 family protein